Index

B

balance() (k_mer.klib.Profile method)

binary_to_dna() (k_mer.klib.Profile method)

C

copy() (k_mer.klib.Profile method)

cosine_similarity() (in module k_mer.metrics)

D

distance() (k_mer.kdistlib.ProfileDistance method) distance_matrix() (in module k_mer.kdistlib) distribution() (in module k_mer.metrics)

dna_to_binary() (k_mer.klib.Profile method) dynamic_smooth() (k_mer.kdistlib.ProfileDistance method)

E

euclidean() (in module k_mer.metrics)

F

from_fasta() (k_mer.klib.Profile class method) from_file() (k_mer.klib.Profile class method)

from_file_old_format() (k_mer.klib.Profile class method)

G

get_scale() (in module k_mer.metrics)

K

k_mer.kdistlib (module) k_mer.klib (module)

k_mer.metrics (module)

M

mean (k_mer.klib.Profile attribute) median (k_mer.klib.Profile attribute) merge() (k_mer.klib.Profile method)

mergers (in module k_mer.metrics) multiset() (in module k_mer.metrics)

N

non_zero (k_mer.klib.Profile attribute)

number (k_mer.klib.Profile attribute)

P

pairwise (in module k_mer.metrics) positive() (in module k_mer.metrics) print_counts() (k_mer.klib.Profile method)

Profile (class in k_mer.klib) ProfileDistance (class in k_mer.kdistlib)

R

reverse_complement() (k_mer.klib.Profile method)

S

save() (k_mer.klib.Profile method) scale_down() (in module k_mer.metrics) shrink() (k_mer.klib.Profile method) shuffle() (k_mer.klib.Profile method)

split() (k_mer.klib.Profile method) std (k_mer.klib.Profile attribute) summary (in module k_mer.metrics)

T

total (k_mer.klib.Profile attribute)

V

vector_distance (in module k_mer.metrics)

vector_length() (in module k_mer.metrics)